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The University of Freiburg is run by the collegial Rectorate. The Rectorate is responsible, among other things, for structure and developmental planning, including human resources development, for planning regarding construction development, and for the preparation and implementation of the budget. Moreover, the Rectorate executes the resolutions of the Senate and the University Council.

The rector represents the University of Freiburg and is chair of the Rectorate and the Senate.

The organization and procedures of the Rectorate of the University of Freiburg are governed by the Rules of Procedure of the Rectorate.